RNA velocity or trajectory related analysis feature

Wondering if there is possibility to add loom files generated from velocyto for RNA velocity analysis.

Or integration of some popular pseudotime trajectory analysis tool such as monocle?

1 Like

Hi Liu,

Trajectory analysis using Monocle3 is already available in Cellenics within the Plots and Tables module.

You might be interested in this blog post that provides guidance on using the trajectory analysis feature: Reproducing a scRNA-seq trajectory analysis plot using Cellenics®

RNA velocity is certainly something that we’re thinking about (Peter Kharchenko is one of the great minds behind Cellenics, after all!), but it’s a little more complex to implement. We’ll certainly keep you posted if/when we decide to build this feature into Cellenics!

1 Like