Data conversion from fastq file to upload in cellenics

Can I convert the fastq files using google collab notebook code. Even if the processing of samples was done using pate base sequencing instead of 10X format.

It is possible to convert FASTQ files using jupyter notebook in your local computer and it should be possible to do so with google collab (although I haven’t tried it). However, when using google collab you should be careful with the timeouts, because collab has a tendency to sign you out during long runs of scripts. I believe this could potentially be fixed by using a premium version of collab.