ScType annotation has some problems

Samples are white blood cells from mice. ScType cannot annotate the clusters. The page keep loading.

Hi ling, this could be due to a few potential issues. One possibility is that the memory resources required for the process are being exceeded due to the size of the dataset. Alternatively, the issue could stem from ScType’s dependence on gene symbols. If your dataset includes Ensembl IDs without the corresponding gene symbols, ScType may not be able to properly annotate the clusters.

To address this, we would need to investigate further with your actual data. Could you please share the project ID with us so we can take a closer look? In the meantime, I’d suggest ensuring that your dataset includes gene symbols, which could potentially resolve the annotation issue.